net.sf.phiweave.common

TreeGraphDescriptor

class TreeGraphDescriptor extends GraphDescriptor

Inherited
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  2. Show all
  1. GraphDescriptor
  2. GraphDescriptorAdapter
  3. JObjectAdapterView
  4. JObjectView
  5. JText
  6. JEntity
  7. AnyRef
  8. Any
Visibility
  1. Public
  2. All

Instance constructors

  1. new TreeGraphDescriptor(gd: GraphDescriptor, opts: Options)

Value Members

  1. def !=(arg0: AnyRef): Boolean

    attributes: final
    definition classes: AnyRef
  2. def !=(arg0: Any): Boolean

    o != arg0 is the same as !(o == (arg0)).

    o != arg0 is the same as !(o == (arg0)).

    arg0

    the object to compare against this object for dis-equality.

    returns

    false if the receiver object is equivalent to the argument; true otherwise.

    attributes: final
    definition classes: Any
  3. def ##(): Int

    attributes: final
    definition classes: AnyRef → Any
  4. def $asInstanceOf[T0](): T0

    attributes: final
    definition classes: AnyRef
  5. def $isInstanceOf[T0](): Boolean

    attributes: final
    definition classes: AnyRef
  6. def ==(arg0: AnyRef): Boolean

    o == arg0 is the same as if (o eq null) arg0 eq null else o.equals(arg0).

    o == arg0 is the same as if (o eq null) arg0 eq null else o.equals(arg0).

    arg0

    the object to compare against this object for equality.

    returns

    true if the receiver object is equivalent to the argument; false otherwise.

    attributes: final
    definition classes: AnyRef
  7. def ==(arg0: Any): Boolean

    o == arg0 is the same as o.equals(arg0).

    o == arg0 is the same as o.equals(arg0).

    arg0

    the object to compare against this object for equality.

    returns

    true if the receiver object is equivalent to the argument; false otherwise.

    attributes: final
    definition classes: Any
  8. def asInstanceOf[T0]: T0

    This method is used to cast the receiver object to be of type T0.

    This method is used to cast the receiver object to be of type T0.

    Note that the success of a cast at runtime is modulo Scala's erasure semantics. Therefore the expression1.asInstanceOf[String] will throw a ClassCastException at runtime, while the expressionList(1).asInstanceOf[List[String]] will not. In the latter example, because the type argument is erased as part of compilation it is not possible to check whether the contents of the list are of the requested typed.

    returns

    the receiver object.

    attributes: final
    definition classes: Any
  9. def clone(): AnyRef

    This method creates and returns a copy of the receiver object.

    This method creates and returns a copy of the receiver object.

    The default implementation of the clone method is platform dependent.

    returns

    a copy of the receiver object.

    attributes: protected
    definition classes: AnyRef
  10. def eq(arg0: AnyRef): Boolean

    This method is used to test whether the argument (arg0) is a reference to the receiver object (this).

    This method is used to test whether the argument (arg0) is a reference to the receiver object (this).

    The eq method implements an [http://en.wikipedia.org/wiki/Equivalence_relation equivalence relation] on non-null instances of AnyRef: * It is reflexive: for any non-null instance x of type AnyRef, x.eq(x) returns true. * It is symmetric: for any non-null instances x and y of type AnyRef, x.eq(y) returns true if and only if y.eq(x) returns true. * It is transitive: for any non-null instances x, y, and z of type AnyRef if x.eq(y) returns true and y.eq(z) returns true, then x.eq(z) returns true.

    Additionally, the eq method has three other properties. * It is consistent: for any non-null instances x and y of type AnyRef, multiple invocations of x.eq(y) consistently returns true or consistently returns false. * For any non-null instance x of type AnyRef, x.eq(null) and null.eq(x) returns false. * null.eq(null) returns true.

    When overriding the equals or hashCode methods, it is important to ensure that their behavior is consistent with reference equality. Therefore, if two objects are references to each other (o1 eq o2), they should be equal to each other (o1 == o2) and they should hash to the same value (o1.hashCode == o2.hashCode).

    arg0

    the object to compare against this object for reference equality.

    returns

    true if the argument is a reference to the receiver object; false otherwise.

    attributes: final
    definition classes: AnyRef
  11. def equals(arg0: Any): Boolean

    This method is used to compare the receiver object (this) with the argument object (arg0) for equivalence.

    This method is used to compare the receiver object (this) with the argument object (arg0) for equivalence.

    The default implementations of this method is an [http://en.wikipedia.org/wiki/Equivalence_relation equivalence relation]: * It is reflexive: for any instance x of type Any, x.equals(x) should return true. * It is symmetric: for any instances x and y of type Any, x.equals(y) should return true if and only if y.equals(x) returns true. * It is transitive: for any instances x, y, and z of type AnyRef if x.equals(y) returns true and y.equals(z) returns true, then x.equals(z) should return true.

    If you override this method, you should verify that your implementation remains an equivalence relation. Additionally, when overriding this method it is often necessary to override hashCode to ensure that objects that are "equal" (o1.equals(o2) returns true) hash to the same scala.Int (o1.hashCode.equals(o2.hashCode)).

    arg0

    the object to compare against this object for equality.

    returns

    true if the receiver object is equivalent to the argument; false otherwise.

    definition classes: AnyRef → Any
  12. def factorIndices: Iterator[Int]

    definition classes: GraphDescriptor
  13. def factorNumOutcomes(fac: Int): Int

    definition classes: GraphDescriptor
  14. def factorNumVariables(fac: Int): Int

    definition classes: GraphDescriptor
  15. def factorObservations(fac: Int): CompressedVector

    definition classes: GraphDescriptor
  16. def factorOutcome(fac: Int, varAss: Array[Int]): Int

    definition classes: GraphDescriptor
  17. def factorToFactorAdjacency: Array[Array[Int]]

    definition classes: GraphDescriptor
  18. def factorToVariableAdjacency: Array[Array[Int]]

    definition classes: GraphDescriptor
  19. def factorType(fac: Int): Int

    definition classes: GraphDescriptor
  20. def factorTypeObject(fac: Int): FactorType

    definition classes: GraphDescriptor
  21. def factorVariable(fac: Int, fvar: Int): Int

    definition classes: GraphDescriptor
  22. def factorVariables(fac: Int): Iterator[Int]

    definition classes: GraphDescriptor
  23. def factorVariablesArray(fac: Int): Array[Int]

    definition classes: GraphDescriptor
  24. def factorVariablesSet(fac: Int): TreeSet[Int]

    definition classes: GraphDescriptor
  25. def factorWeight(fac: Int): Double

    definition classes: GraphDescriptor
  26. val factors: Array[Array[Int]]

    definition classes: GraphDescriptorGraphDescriptorAdapter
  27. def factorsOfType(ftype: Int): Iterator[Int]

    definition classes: GraphDescriptor
  28. def finalize(): Unit

    This method is called by the garbage collector on the receiver object when garbage collection determines that there are no more references to the object.

    This method is called by the garbage collector on the receiver object when garbage collection determines that there are no more references to the object.

    The details of when and if the finalize method are invoked, as well as the interaction between finalizeand non-local returns and exceptions, are all platform dependent.

    attributes: protected
    definition classes: AnyRef
  29. def fullyObserved: Boolean

    definition classes: GraphDescriptor
  30. def getClass(): java.lang.Class[_]

    Returns a representation that corresponds to the dynamic class of the receiver object.

    Returns a representation that corresponds to the dynamic class of the receiver object.

    The nature of the representation is platform dependent.

    returns

    a representation that corresponds to the dynamic class of the receiver object.

    attributes: final
    definition classes: AnyRef
  31. val getMap: Map[JString, () ⇒ JEntity]

    attributes: protected
    definition classes: JObjectAdapterView
  32. def hashCode(): Int

    Returns a hash code value for the object.

    Returns a hash code value for the object.

    The default hashing algorithm is platform dependent.

    Note that it is allowed for two objects to have identical hash codes (o1.hashCode.equals(o2.hashCode)) yet not be equal (o1.equals(o2) returns false). A degenerate implementation could always return 0. However, it is required that if two objects are equal (o1.equals(o2) returns true) that they have identical hash codes (o1.hashCode.equals(o2.hashCode)). Therefore, when overriding this method, be sure to verify that the behavior is consistent with the equals method.

    returns

    the hash code value for the object.

    definition classes: AnyRef → Any
  33. def indicatorsForAssignment(varAss: Array[Int]): Array[Array[Double]]

    definition classes: GraphDescriptor
  34. def isInstanceOf[T0]: Boolean

    This method is used to test whether the dynamic type of the receiver object is T0.

    This method is used to test whether the dynamic type of the receiver object is T0.

    Note that the test result of the test is modulo Scala's erasure semantics. Therefore the expression1.isInstanceOf[String] will return false, while the expression List(1).isInstanceOf[List[String]] will return true. In the latter example, because the type argument is erased as part of compilation it is not possible to check whether the contents of the list are of the requested typed.

    returns

    true if the receiver object is an instance of erasure of type T0; false otherwise.

    attributes: final
    definition classes: Any
  35. def isTree: Boolean

    definition classes: GraphDescriptor
  36. def jderror(unexpected: JEntity, expected: String, id: String): Nothing

    definition classes: JEntity
  37. def jelements: Iterator[(JString, JEntity)]

    definition classes: JObjectAdapterViewJObjectView
  38. def jget(name: JString): JEntity

    definition classes: JObjectAdapterView
  39. def jget(name: String)(f: ⇒ JEntity): Unit

    attributes: protected
    definition classes: JObjectAdapterView
  40. def jserror(unserializable: String, id: String): Nothing

    definition classes: JEntity
  41. def maxEntropy: Double

    definition classes: GraphDescriptor
  42. def maxFactorEntropy: Double

    definition classes: GraphDescriptor
  43. def mkFactor(vars: Array[Int], pots: Array[Double]): Factor

    definition classes: GraphDescriptor
  44. def mkFactor(vars: Array[Int]): Factor

    definition classes: GraphDescriptor
  45. def mkFactor(fac: Int, pots: Array[Double]): Factor

    definition classes: GraphDescriptor
  46. def mkFactor(fac: Int): Factor

    definition classes: GraphDescriptor
  47. def mkMessage(v: Int, pots: Array[Double]): Message

    definition classes: GraphDescriptor
  48. def mkMessage(v: Int): Message

    definition classes: GraphDescriptor
  49. var model: Model

    attributes: protected[phiweave]
    definition classes: GraphDescriptorGraphDescriptorAdapter
  50. def ne(arg0: AnyRef): Boolean

    o.ne(arg0) is the same as !(o.eq(arg0)).

    o.ne(arg0) is the same as !(o.eq(arg0)).

    arg0

    the object to compare against this object for reference dis-equality.

    returns

    false if the argument is not a reference to the receiver object; true otherwise.

    attributes: final
    definition classes: AnyRef
  51. def notify(): Unit

    Wakes up a single thread that is waiting on the receiver object's monitor.

    Wakes up a single thread that is waiting on the receiver object's monitor.

    attributes: final
    definition classes: AnyRef
  52. def notifyAll(): Unit

    Wakes up all threads that are waiting on the receiver object's monitor.

    Wakes up all threads that are waiting on the receiver object's monitor.

    attributes: final
    definition classes: AnyRef
  53. def numFactorOutcomes(f: Int): Int

    definition classes: GraphDescriptor
  54. def numFactors: Int

    definition classes: GraphDescriptor
  55. def numVariableOutcomes(v: Int): Int

    definition classes: GraphDescriptor
  56. def numVariables: Int

    definition classes: GraphDescriptor
  57. val observations: Array[CompressedVector]

    definition classes: GraphDescriptorGraphDescriptorAdapter
  58. def observedAssignment: Array[Int]

    definition classes: GraphDescriptor
  59. def print(buf: OutputBuffer, path: List[String], verbose: (JEntity, List[String]) ⇒ Boolean): Unit

    definition classes: JObjectViewJEntity
  60. def synchronized[T0](arg0: T0): T0

    attributes: final
    definition classes: AnyRef
  61. def toString(): String

    Returns a string representation of the object.

    Returns a string representation of the object.

    The default representation is platform dependent.

    returns

    a string representation of the object.

    definition classes: GraphDescriptorJObjectView → AnyRef → Any
  62. def treeDecomposition(): (Array[BitSet], Array[BitSet])

    definition classes: TreeGraphDescriptorGraphDescriptor
  63. def treeDecomposition(opts: Options): (Array[BitSet], Array[BitSet])

    definition classes: GraphDescriptor
  64. def variable(v: Int): Array[Int]

    attributes: protected
    definition classes: GraphDescriptor
  65. def variableIndices: Iterator[Int]

    definition classes: GraphDescriptor
  66. def variableToFactorAdjacency: Array[Array[Int]]

    definition classes: GraphDescriptor
  67. def variableToVariableAdjacency: Array[Array[Int]]

    definition classes: GraphDescriptor
  68. def variableType(v: Int): Int

    definition classes: GraphDescriptor
  69. val variables: Array[Array[Int]]

    definition classes: GraphDescriptorGraphDescriptorAdapter
  70. def wait(): Unit

    attributes: final
    definition classes: AnyRef
  71. def wait(arg0: Long, arg1: Int): Unit

    attributes: final
    definition classes: AnyRef
  72. def wait(arg0: Long): Unit

    attributes: final
    definition classes: AnyRef